Sunday, October 12, 2014

Eichmann revealed


Archival work reveals that Hannah Arendt (Eichmann in Jerusalem) and many other observers were fooled by Eichmann during his trial. He was more than a cog, not merely banal, and did indeed think about his actions during the Holocaust. Bettina Stangneth's recent book, Eichmann before Jerusalem is fascinating reading.
NYTimes: ... The story of the Sassen interviews, one of the most important post-Holocaust documents, is itself a kind of cloak-and-­dagger account as Stangneth tells it, featuring hidden or lost tapes, faulty transcriptions, furtive meetings, profiteering and various other kinds of intrigue. ...

It is in these interviews and Eichmann’s own notes that he gave uninhibited vent to his version of the Holocaust and his involvement. Since he had a penchant for tailoring his endless chatting and voluminous writings to what he believed his audience desired, it may not be immediately evident why his statements in Buenos Aires should be considered more authentic than the “little man” portrait he painted in Jerusalem. The answer lies in the stance he took against what his Nazi and radical-right audience wanted to hear. For they were intent on either denying the Holocaust altogether, or outlandishly regarding it as either a Zionist plot to obtain a Jewish state or a conspiracy of the Gestapo (not the SS) working against Hitler and without his knowledge. Eichmann dashed these expectations. Not only did he affirm that the horrific events had indeed taken place; he attested to his decisive role in them. Hardly anonymous, he insisted on his reputation as the great mover behind Jewish policy, which became part of the fear, the mystique of power, surrounding him. As Stangneth observes: “He dispatched, decreed, allowed, took steps, issued orders and gave audiences.”

... Eichmann was far from a thoughtless functionary simply performing his duty. He proceeded quite intentionally from a set of tenaciously held Nazi beliefs (hardly consonant with Arendt’s puzzling contention that he “never realized what he was doing”). His was a consciously wrought racial “ethics,” one that pitted as an ultimate value the survival of one’s own blood against that of one’s enemies. ...

From a surprising admission of German inferiority — “we are fighting an enemy who ... is intellectually superior to us” — it followed that total extermination of the Jewish adversary “would have fulfilled our duty to our blood and our people and to the freedom of the peoples.” ...

See also this exchange: Arendt and Eichmann (NY Review of Books), and What it was like.

Monday, October 06, 2014

Common variants and the biological and genomic architecture of human height

The latest from the GIANT collaboration. They are also estimating ~ 10k causal variants in total, with 697 now identified at genome-wide significance. See On the genetic architecture of intelligence and other quantitative traits for related discussion.

With ~1k variants to work with, we can expect progress on the question of whether the ~1 SD group difference in height between north and south europeans is due to selection. Uniformly higher SNP frequencies in the north for variants that slightly increase height would be strong evidence of selection. See Recent human evolution: european height.
Defining the role of common variation in the genomic and biological architecture of adult human height (Nature Genetics doi:10.1038/ng.3097 )

Using genome-wide data from 253,288 individuals, we identified 697 variants at genome-wide significance that together explained one-fifth of the heritability for adult height. By testing different numbers of variants in independent studies, we show that the most strongly associated ~2,000, ~3,700 and ~9,500 SNPs explained ~21%, ~24% and ~29% of phenotypic variance. Furthermore, all common variants together captured 60% of heritability. The 697 variants clustered in 423 loci were enriched for genes, pathways and tissue types known to be involved in growth and together implicated genes and pathways not highlighted in earlier efforts, such as signaling by fibroblast growth factors, WNT/β-catenin and chondroitin sulfate–related genes. We identified several genes and pathways not previously connected with human skeletal growth, including mTOR, osteoglycin and binding of hyaluronic acid. Our results indicate a genetic architecture for human height that is characterized by a very large but finite number (thousands) of causal variants.


From the discussion section:
It has been argued that the biological information emerging from GWAS will become less relevant as sample sizes increase because, as thousands of associated variants are discovered, the range of impli- cated genes and pathways will lose specificity and cover essentially the entire genome. If this were the case, then increasing sample sizes would not help to prioritize follow-up studies aimed at identifying and understanding new biology and the associated loci would blanket the entire genome. Our study provides strong evidence to the contrary: the identification of many hundred and even thousand associated variants can continue to provide biologically relevant information. In other words, the variants identified in larger sample sizes both display a stronger enrichment for pathways clearly relevant to skeletal growth and prioritize many additional new and relevant genes. Furthermore, the associated variants are often non-randomly and tightly clustered (typically separated by < 250kb), resulting in the frequent presence of multiple associated variants in a locus. The observations that genes and especially pathways are now beginning to be implicated by multiple variants suggests that the larger set of results retain biological specificity but that, at some point, a new set of associated variants will largely highlight the same genes, pathways and biological mechanisms as have already been seen.

Friday, October 03, 2014

Chief Executives: brainpower, personality, and height

This paper uses Swedish conscript data to examine characteristics of CEOs of large and medium sized companies. Also discussed on Marginal Revolution. Thanks to Carl Shulman for the link.

It looks like large company CEOs are roughly +1, +1.5 and +0.5 SD on cognitive ability, non-cognitive ability (see below) and height, respectively. Apparently Swedish medical doctors are also only about +1 SD in cognitive ability (see article).


Horizontal axes are on a stanine (STAndard NINE) scale. On this scale a normal distribution is divided into nine intervals, each of which has a width of 0.5 standard deviations excluding the first and last.
Match Made at Birth? What Traits of a Million Swedes Tell Us about CEOs

Abstract: This paper analyzes the role three personal traits — cognitive and non-cognitive ability, and height — play in the market for CEOs. We merge data on the traits of more than one million Swedish males, measured at age 18 in a mandatory military enlistment test, with comprehensive data on their income, education, profession, and service as a CEO of any Swedish company. We find that the traits of large-company CEOs are at par or higher than those of other high-caliber professions. For example, large-company CEOs have about the same cognitive ability, and about one-half of a standard deviation higher non-cognitive ability and height than medical doctors. Their traits compare even more favorably with those of lawyers. The traits contribute to pay in two ways. First, higher-caliber CEOs are assigned to larger companies, which tend to pay more. Second, the traits contribute to pay over and above that driven by firm size. We estimate that 27-58% of the effect of traits on pay comes from CEO’s assignment to larger companies. Our results are consistent with models where the labor market allocates higher-caliber CEOs to more productive positions.

... The cognitive-ability test consists of four subtests designed to measure inductive reasoning (Instruction test), verbal comprehension (Synonym test), spatial ability (Metal folding test), and technical comprehension (Technical comprehension test).

[Non-cognitive ability:] Psychologists use test results and family characteristics in combination with one-on-one semi-structured interviews to assess conscripts’ psychological fitness for the military. Psychologists evaluate each conscript’s social maturity, intensity, psychological energy, and emotional stability and assign a final aptitude score following the stanine scale. Conscripts obtain a higher score in the interview when they demonstrate that they have the willingness to assume responsibility, are independent, have an outgoing character, demonstrate persistence and emotional stability, and display initiative. Importantly, a strong desire for doing military service is not considered a positive attribute for military aptitude (and may even lead to a negative assessment), which means that the aptitude score can be considered a more general measure of non-cognitive ability.
See related post Creators and Rulers:
I went to Harvard Business School, a self-styled pantheon for the business elite.

The average person was:
- top decile intellect (though probably not higher)
- top decile emotional intelligence (broadly construed - socially aware, self-aware, persuasion skills, etc.)
- highly conscientious / motivated

Few were truly brilliant intellectually. Few were academically distinguished (plenty of good ivy league degrees, but very few brilliant mathematical minds, etc.).

A good number will be at Davos in 20 years time.

Performance beyond a certain level in the vast majority of fields (and business is certainly one of them) is principally a function of having no cognitive and personal qualities which fall below a (high, but not insanely high) hygene threshold -- and then multiplied by determination, of course.

Conscientiousness, in fact, is the best single stable predictor of job success for complex jobs (well established in personality psychometrics).

Very high intelligence actually negatively correlates with career success (Kotter), probably because smart people enjoy solving problems, rather than making money selling things -- which outside of quant trading, show business and sport is really the only way of being really successful.

There are some extremely intelligent people in business (by which I mean high IQ, not just wise or experienced), but you tend to find them in the corners of the business landscape with the richest intellectual pastures: some areas of law, venture capital, some cutting edge technology fields.
See also Human capital mongering: M-V-S profiles. Note deviation scores (SDs) here are relative to the average among the gifted kids in the sample, not relative to the general population. The people in this sample are probably above average in the general population on each of M-V-S.
The figure below displays the math, verbal and spatial scores of gifted children tested at age 12, and their eventual college majors and career choices. This group is cohort 2 of the SMPY/SVPY study: each child scored better than 99.5 percentile on at least one of the M-V sections of the SAT.





Scores are normalized in units of SDs. The vertical axis is V, the horizontal axis is M, and the length of the arrow reflects spatial ability: pointing to the right means above the group average, to the left means below average; note the arrow for business majors should be twice as long as indicated but there was not enough space on the diagram. The spatial score is obviously correlated with the M score.

Upper right = high V, high M (e.g., physical science)
Upper left = high V, lower M (e.g., humanities, social science)
Lower left = lower V, lower M (e.g., business, law)
Lower right = lower V, high M (e.g., math, engineering, CS)

Big Chickens


More evidence that common genetic variants can produce many standard deviations of change in average phenotype. Also, while wild chickens lay ~1 egg per month, modern agricultural types lay ~1 per day.

The study is described in more detail here. Thanks to Carl Shulman for the link.

See also Plenty of room at the top and sections 3.1 and 3.3 of On the genetic architecture of intelligence and other quantitative traits.

Wednesday, October 01, 2014

Adventures in the high dimensional space of genomes


2000+ views in 4 months is not bad considering that this is a genomics paper but uses terms like phase transition, sparsity, L1-penalized regression, Gaussian random matrices, etc. I wish I knew how many views the arXiv and BioMed Central versions of the paper have received. Related posts.
Dear Dr Hsu,

We thought you might be interested to know how many people have read your article:

Applying compressed sensing to genome-wide association studies
Shashaank Vattikuti, James J Lee, Christopher C Chang, Stephen D H Hsu and Carson C Chow
GigaScience, 3:10 (16 Jun 2014)
http://www.gigasciencejournal.com/content/3/1/10

Total accesses to this article since publication: 2266

This figure includes accesses to the full text, abstract and PDF of the article on the GigaScience website. It does not include accesses from PubMed Central or other archive sites (see http://www.biomedcentral.com/about/archive). The total access statistics for your article are therefore likely to be significantly higher. ...
My guess is still that it will take some time before these methods become widely understood in genomics.
Crossing boundaries: ... In a similar way Turing found a home in Cambridge mathematical culture, yet did not belong entirely to it. The division between 'pure' and 'applied' mathematics was at Cambridge then as now very strong, but Turing ignored it, and he never showed mathematical parochialism. If anything, it was the attitude of a Russell that he acquired, assuming that mastery of so difficult a subject granted the right to invade others.

PS I will be at the ASHG meeting in San Diego later this month along with (I think) all of the other authors of the paper. Vattikuti will be giving a poster session.

Saturday, September 27, 2014

Twins reared apart


For those interested in studies of identical twins reared apart, see IQ Similarity of Twins Reared Apart: findings and responses to critics, Bouchard (1997). A question sometimes raised by critics concerns the extent to which twins reared apart actually experienced different environments. Norms of reaction, GxE interactions, and other (conceptually trivial but potentially obfuscatory) topics are also discussed.

Susan Farber wrote a 1981 book that was critical of twin studies. Click below for larger image.



See also Heritability 2.0.

Monday, September 22, 2014

Piketty on Capital


Piketty on EconTalk (podcast) -- a lively discussion between Russ Roberts and guest Thomas Piketty. See earlier post here.
Piketty: ... to summarize very quickly our conclusion, we feel that the theory of marginal productivity is a bit naive, I think for this top part of the labor market. That is to say when a manager manages to get a pay increase from $1 million a year to $10 million a year, according to the textbook based on marginal productivity, this should be due to the fact that his marginal contribution to the output of his company has risen from 1 to 10. Now it seems a bit naive. It could be that in practice individual marginal productivities are very hard to observe and monitor, especially in a large corporation. And there is clearly strong incentives for top managers to try to get as much as they can.

... Now, when the top tax rate is 82%, now of course you always want to be paid $1 million more, but on the margin when you get a pay increase of $1 million, 82% is going to go straight to the Treasury, so your incentive to bargain very aggressively and put the right people in the right compensation committee are going to be not so strong. And also your shareholders, your subordinates, maybe will tend to tell you, look, this is very costly. Whereas when the top tax rate goes down to 20, 30% or even 40%, so you keep 2/3rds or 60% of the extra $1 million for you, then the incentives are very, very different. Now, this model seems to explain part of what we observe in the data. In particular, it's very difficult to see any improvement in the performance of managers who are getting $10 million instead of $1 million. When we put together a data base with all the publicly traded companies in North America, Europe, Japan, trying to compare in the companies that are paying their managers $10 million instead of $1 million, it's very difficult to see in the data any extra performance.

... But let me make clear that I love capital accumulation and I certainly don't want to reduce capital accumulation. The problem is the concentration. So let me make very clear that inequality in itself is of course not a problem. Inequality can actually be useful for growth. Up to a point. The problem is when inequality of wealth and concentration of wealth gets too extreme, it is not useful any more for growth. And it can even become bad, because it leads to high perpetuation of inequality over time, so it can reduce social mobility. And it can also be bad for the working or for the democratic institutions. So where is the tipping point--when is it that inequality becomes excessive? Well, I'm sorry to tell you that I don't have a formula for that.

... In the United States right now, the bottom 50% of the population own about 2% of national wealth. And the next 40% own about 20, 22% of national wealth. And this group, the middle 40%, the people who are not in the bottom 50% and who are not in the top 10%, they used to own 25-30% of national wealth. And this has been going down in recent decades, as shown by a recent study by Saez and Zucman and now is closer to 20, 22%. Now, how much should it be? I don't know. I don't know. But the view that we need the middle class share to go down and down and down and that this is not a problem as long as you have positive growth, I think is excessive. You know, I think, of course we need entrepreneurs. I'm not saying, look, if it was perfect equality the bottom 50% should own 50% and the next 40% should own 40. I am not saying that we should have this at all. I'm just saying that when you have 2% for the bottom 50 and 22 for the next 40, you know, the view that we cannot do better than that [[ because ]] you won't have entrepreneurs any more, you won't have growth any more, is very ideological.

... I am actually a lot more optimistic than what some people seem to believe. I'm very sorry some people feel depressed after they read my book because after all this is not the way I wrote it. In fact, I think there are lots of reasons to be optimistic. For instance, one good news coming from the book is that we've never been as rich in terms of net wealth than we are today in developed countries. And we talk all the time about our public debt, but in fact our private wealth as a fraction of GDP has increased a lot more than our public debt as a fraction of GDP, so our national wealth, the sum of private and public wealth, is actually higher than it has ever been. So our countries are rich. It is our governments that are poor, which is a problem; but it raises issues of organization and institution but that can be addressed.

Ivy admissions discussed by parents of gifted kids


At this link you can find pages of discussion about Ivy admissions, stimulated at least in part by Pinker's recent article (see here and here), among parents of highly gifted children. Most of the discussants realize that there is a lot of room in the tail beyond the SAT ceiling. (Hint: parents of gifted kids tend to be fairly sharp themselves ... I wonder why? ;-)

I am not one of the commenters on the thread. Bonus points if you click the link above and read through to the Bezos quote ;-)
####
I suspect the 10 percent comment means something along the lines of 10 percent have been Intel semifinalists, have published significant research, qualified for USAMO, etc. That doesn't mean that the other 90 percent are dumb jocks and clueless legacies. The 90 percent probably includes some very bright, gifted kids, but they haven't cured cancer (not yet at least).
It means that 5%-10% are selected on academic merit alone. The rest are selected on a combination of factors. They may (mostly) have quite high academic merit, but other factors are considered, and so the overall academic merit of the class, though high, is less than it would have been if academic merit played a larger role in admissions. Students are admitted who are less academically meritorious than some who are rejected.

####

Regardless of what colleges supposedly should do, and what they do do, there is still the inescapable fact that SAT/ACT test have too low a ceiling, and the colleges are missing a huge amount of information about the academic ability of their applicants, and there is no excuse for them not actively pushing for harder tests.

####

They have a very good reason for refusing harder tests--it restricts their freedom. The first goal for colleges are self preservation and growth, hence the preference for legacies and athletics, both of which fuel alumni donations. But once self-preservation and growth has been achieved, college believe themselves to be forces for social engineering, helping right what they see as wrong in society.

####

Maybe it isn't about a harder test. Let's say that current perfect scores get you a group at a top school with IQs of 135+. Maybe it is 140+. With a different test, do you get 150+. But do you get a group that you want? Do they have the social skills to have a good mix, good clubs? There are factors that you want to have a certain type of school whether you are Harvard or Penn State. Harvard doesn't want a whole school that could pursue graduate work in Physics. They want fencing teams and rowing and a football team to play Yale. So for those of you wishing for a harder test, what does that mean to the student body, the college experience if you don't take into account all the other things. Because how much does it change if your roommate has an IQ of 175 in math, but 125 in ELA or 145 overall? I can see MIT wanting the 175 in math but Ivy's? Do you really want your kid going to a school where they just sit and have deep discussions about theories with other students?

####

But that assumes that those people are only interested in their peculiar "pointy" things. And that PG people lack social skills. Which is where my A versus B archetypes came from to begin with. Assume that they are BOTH HG+.

HG+ people come in a lot of different varieties there.

Just because someone has a FSIQ of 150+ doesn't mean that s/he is necessarily passionate about particle physics. It might mean that s/he is capable of learning it, but even that probably depends on the individual.

[[ IIUC, PG = Profoundly Gifted ; HG = Highly Gifted ]]

####
Do you really want your kid going to a school where they just sit and have deep discussions about theories with other students?
Where they just talk about big ideas? No. But I suspect that no one talks about nothing but big ideas, so the question is exaggerated.

As for a place where talking about big ideas is a normal part of the culture, yes, absolutely. Isn't that supposed to be the point about being at a place that calls itself a top-tier university --- that the people there are very bright and interested in big ideas in science, philosophy, history, and so on?

Saturday, September 20, 2014

How to build the future

I just bought 10 copies for my team at MSU. More here. The book is based on Thiel's Stanford class CS 183: Startup -- see course notes.

Earlier posts on Thiel.

Thursday, September 18, 2014

Excellent Sheep and Chinese Americans

Two recent podcasts I recommend. I disagree with Deresiewicz on many points (see my comments on Steve Pinker's response here and here), but the discussion is worth a listen.
Do the Best Colleges Produce the Worst Students?

As schools shift focus from the humanities to "practical" subjects like economics and computer science, students are losing the ability to think in innovative ways, argues William Deresiewicz. When he was a professor at Yale he noticed that his students, some of the nation’s brightest minds, seemed to be adrift when it came to knowing how to think critically and creatively and how to find a sense of purpose in life. Deresiewicz explains why he thinks college should be a time for self-discovery, when students can establish their own values and measures of success, so they can forge their own path. His book Excellent Sheep : The Miseducation of the American Elite and the Way to a Meaningful Life addresses parents, students, educators, and anyone who's interested in the direction of American society, exposing where the system is broken and presenting solutions.




Chinese Americans and the American Dream

In many ways, Chinese Americans today are exemplars of the American Dream—moving from indentured servitude to second-class status and outright exclusion to economic to social integration and achievement. But this narrative leaves a lot out. Eric Liu, author, educator, and entrepreneur, pieces together a sense of the Chinese American identity and looks at what it means to be Chinese American in this moment. His new book A Chinaman's Chance: One Family's Journey and the Chinese American Dream is a collection of personal essays that range from the meaning of Confucius to the role of Chinese Americans in shaping how we read the Constitution to why he hates the hyphen in "Chinese-American."

Sunday, September 14, 2014

Harvard admissions and meritocracy

Motivated by Steve Pinker's recent article The Trouble With Harvard (see my comments here), Ephblog drills down on Harvard admissions. The question is just how far Harvard deviates from Pinker's ideal of selecting the entire class based on intellectual ability. Others raised similar questions, as evidenced by, e.g., the very first comment that appeared on The New Republic's site:
JakeH 10 days ago

Great article. One quibble: Pinker says, based on "common knowledge," that only ten (or five) percent of Harvard students are selected based on academic merit, and that the rest are selected "holistically." His implication is that "holistic" consideration excludes academic merit as a major factor. But that's surely not the case. Even if Harvard only selects ten percent of its students based on academic factors alone, it seems likely that academic and test score standards are high for the remaining 90 percent. We don't have enough information on this point, because, I suppose, it's not available. (To solve that problem, I join Pinker's call for a more transparent admissions process.)
I don't know exactly how Harvard admissions works -- there are all sorts of mysteries. But let me offer the following observations.

1. Pinker claimed that only 5-10 percent of the class is admitted purely on the basis of academic merit (see more below). The 5-10 percent number was widely reported in the past, including by scholar Jerome Karabel. No one knows what Harvard is up to at the moment and it's possible that, given the high demand for elite education, they have increased their academic focus over the years.

2. IIRC, the current SAT ceiling of 1600 (M+CR) corresponds to about 1 in 1000 ability (someone please tell me if I am mistaken). So there are at least a couple thousand US kids per cohort at this ability level, and several times more who are near it ("within the noise"). A good admissions committee would look at other higher ceiling measures of ability (e.g., performance in math and science competitions) to rank order top applicants. The 800 ceiling on the math is not impressive at all -- a kid who is significantly below this level has almost no chance of mastering the Caltech required curriculum (hence even the 25th percentile math SAT score at Caltech is 770; in my day the attrition rate at Caltech was pretty high -- a lot of people "flamed out"). The reduced SAT ceiling makes it easier for Harvard to hide what it is up to.

4. My guess is that Harvard still has a category, in the past called S ("Scholar"; traditionally 5-10 percent of the class, but perhaps larger now), for the top rank-ordered candidates in academic ability alone. Most of the near-perfect scorers on the SAT will not qualify for S -- it is more impressive to have been a finalist in the Intel science competition, written some widely used/acclaimed code, made (or nearly made) the US IMO or IPhO teams, published some novel research or writing, etc. Harvard sometimes boasts about the number of perfect SAT scorers it rejects each year, so clearly one can't conclude that a 1600 on CR+M alone qualifies for the S category. Along these lines, one even reads occasional stories about Harvard rejecting IMO participants.

5. In remaining categories Harvard almost certainly uses a more holistic approach that also weights athletics, extracurriculars, etc. Some of the people who score high on this weighted measure might not have qualified in S, but nevertheless are near the ceiling in SAT score. It has been reported in the past that Harvard used a 1-5 scoring system in academics, sports, leadership, music, etc. and that to have serious consideration (outside the S category, which is for real superstars), one needed to have two or more "1" scores -- e.g., valedictorian/high SATs + state-level tennis player + ...

From the comments above, it should be clear that one can't simply use the percentage of near-perfect SAT scorers in the class to determine the size of the S category.

See here for discussion of meritocratic test-based systems in other countries. For instance, the Indian IIT, the French Ecole Normale Superieure, and the Taiwan university entrance exams, have in the past explicitly ranked the top scorers each year. (The tests are hard enough that typically no one gets near a perfect score; note things may have changed recently.) I know more than a few theoretical physicists who scored in the top 5 in their entire country on these exams. Mandlebrot writes in his autobiography about receiving the highest ENS score in France.

Friday, September 12, 2014

Embrace the Grind

Talent, hard work, and success in jiujitsu. "Show up every day and keep pushing through."

Wednesday, September 10, 2014

What is best for Harvard


I highly recommend Steve Pinker's The Trouble With Harvard in The New Republic.
... Like many observers of American universities, I used to believe the following story. Once upon a time Harvard was a finishing school for the plutocracy, where preppies and Kennedy scions earned gentleman’s Cs while playing football, singing in choral groups, and male-bonding at final clubs, while the blackballed Jews at CCNY founded left-wing magazines and slogged away in labs that prepared them for their Nobel prizes in science. Then came Sputnik, the '60s, and the decline of genteel racism and anti-Semitism, and Harvard had to retool itself as a meritocracy, whose best-and-brightest gifts to America would include recombinant DNA, Wall Street quants, The Simpsons, Facebook, and the masthead of The New Republic.

This story has a grain of truth in it: Hoxby has documented that the academic standards for admission to elite universities have risen over the decades. But entrenched cultures die hard, and the ghost of Oliver Barrett IV still haunts every segment of the Harvard pipeline.

At the admissions end, it’s common knowledge that Harvard selects at most 10 percent (some say 5 percent) of its students on the basis of academic merit. At an orientation session for new faculty, we were told that Harvard “wants to train the future leaders of the world, not the future academics of the world,” and that “We want to read about our student in Newsweek 20 years hence” (prompting the woman next to me to mutter, “Like the Unabomer”). The rest are selected “holistically,” based also on participation in athletics, the arts, charity, activism, travel, and, we inferred (Not in front of the children!), race, donations, and legacy status (since anything can be hidden behind the holistic fig leaf).

The lucky students who squeeze through this murky bottleneck find themselves in an institution that is single-mindedly and expensively dedicated to the pursuit of knowledge. It has an astonishing library system that pays through the nose for rare manuscripts, obscure tomes, and extortionately priced journals; exotic laboratories at the frontiers of neuroscience, regenerative medicine, cosmology, and other thrilling pursuits; and a professoriate with erudition in an astonishing range of topics, including many celebrity teachers and academic rock stars. The benefits of matching this intellectual empyrean with the world’s smartest students are obvious. So why should an ability to play the bassoon or chuck a lacrosse ball be given any weight in the selection process?

The answer, ironically enough, makes the admissocrats and Deresiewicz strange bedfellows: the fear of selecting a class of zombies, sheep, and grinds. But as with much in the Ivies’ admission policies, little thought has given to the consequences of acting on this assumption. Jerome Karabel has unearthed a damning paper trail showing that in the first half of the twentieth century, holistic admissions were explicitly engineered to cap the number of Jewish students. Ron Unz, in an exposé even more scathing than Deresiewicz’s, has assembled impressive circumstantial evidence that the same thing is happening today with Asians.

Just as troublingly, why are elite universities, of all institutions, perpetuating the destructive stereotype that smart people are one-dimensional dweebs? It would be an occasion for hilarity if anyone suggested that Harvard pick its graduate students, faculty, or president for their prowess in athletics or music, yet these people are certainly no shallower than our undergraduates. In any case, the stereotype is provably false. Camilla Benbow and David Lubinski have tracked a large sample of precocious teenagers identified solely by high performance on the SAT, and found that when they grew up, they not only excelled in academia, technology, medicine, and business, but won outsize recognition for their novels, plays, poems, paintings, sculptures, and productions in dance, music, and theater. A comparison to a Harvard freshman class would be like a match between the Harlem Globetrotters and the Washington Generals.
Pinker's position is similar to that of some of his distinguished predecessors on the Harvard faculty (see below). The ideal school Pinker is describing is called "Caltech" :-)
Defining Merit:
[The Chosen, Jerome Karabel] ... In a pair of letters that constituted something of a manifesto for the wing of the faculty favoring strict academic meritocracy, Wilson explicitly advocated admitting fewer private school students and commuters, eliminating all preferences for athletes, and (if funds permitted) selecting "the entering class regardless of financial need on the basis of pure merit." The issue of athletes particularly vexed Wilson, who stated flatly: "I would certainly rule out athletic ability as a criterion for admission of any sort," adding that "it bears a zero relationship to the performance later in life that we are trying to predict." He also argued that "it may well be that objective test scores are our only safeguards against an excessive number of athletes only, rich playboys, smooth characters who make a good impression in interviews, etc." As a parting shot, Wilson could not resist accusing Ford of anti-intellectualism; citing Ford's desire to change Harvard's image, Wilson asked bluntly: "What's wrong with Harvard being regarded as an egghead college? Isn't it right that a country the size of the United States should be able to afford one university in which intellectual achievement is the most important consideration?"
E. Bright Wilson was professor of chemistry and member of the National Academy of Sciences, later a recipient of the National Medal of Science. The last quote from Wilson could easily have come from anyone who went to Caltech! Indeed, both E. Bright Wilson and his son, Nobel Laureate Ken Wilson (theoretical physics), earned their doctorates at Caltech (the father under Linus Pauling, the son under Murray Gell-Mann). ...
Some have quibbled with Pinker's assertion that only 5 or 10% of the Harvard class is chosen with academic merit as the sole criterion. They note the overall high scores of Harvard students as evidence against this claim. But a simple calculation makes it obvious that the top 2000 or so high school seniors (including international students, who would eagerly attend Harvard if given the opportunity), ranked by brainpower alone, would be much stronger intellectually than the typical student admitted to Harvard today. (Vanderbilt researchers David Lubinski and Camilla Benbow, mentioned above by Pinker, study a population that is roughly 1 in 10k in ability. About two hundred US high school seniors with this level of talent are available each year; adding in international students increases the total significantly.)
Defining Merit: ... Bender also had a startlingly accurate sense of how many truly intellectually outstanding students were available in the national pool. He doubted whether more than 100-200 candidates of truly exceptional promise would be available for each year's class. This number corresponds to (roughly) +4 SD in mental ability. Long after Bender resigned, Harvard still reserved only 10 percent of its places (roughly 150 spots) for "top brains". (See category "S" listed at bottom.) ...

Typology used for all applicants, at least as late as 1988:

1. S First-rate scholar in Harvard departmental terms.
In the end, however, I have to agree with old Wilbur Bender, the Harvard admissions dean who fought off idealistic faculty committees in the the 1950s. A Harvard that followed Pinker's advice would, after a generation or two, be reduced in status, prestige, and endowment size, to a mere Caltech or Ecole Normale Superieure. (Both schools, by some estimates, produce Nobel Prize winning alumni at a rate several times higher than Harvard.)

What is good for our nation, and for civilization as a whole, is not what is best for Harvard.

Monday, September 08, 2014

Common genetic variants associated with cognitive performance

This is a follow up to earlier papers by the SSGAC collaboration -- see First GWAS Hits For Cognitive Ability and SNPs and SATS. Effect sizes found are typically ~ 0.3 IQ points. Someone with 50 more good variants (similar to these) than the average person would be about 1 SD above average in IQ.

Note among the authors names like Pinker, Visscher, Plomin, McGue, Deary, etc. Thank god it wasn't the sinister Chinese who got there first! For more on this topic, including the status of the BGI study, see Genetic Architecture of Intelligence (arXiv:1408.3421).
Common genetic variants associated with cognitive performance identified using the proxy-phenotype method (PNAS, doi: 10.1073/pnas.1404623111)

We identify common genetic variants associated with cognitive performance using a two-stage approach, which we call the proxy-phenotype method. First, we conduct a genome-wide association study of educational attainment in a large sample (n = 106,736), which produces a set of 69 education-associated SNPs. Second, using independent samples (n = 24,189), we measure the association of these education-associated SNPs with cognitive performance. Three SNPs (rs1487441, rs7923609, and rs2721173) are significantly associated with cognitive performance after correction for multiple hypothesis testing. In an independent sample of older Americans (n = 8,652), we also show that a polygenic score derived from the education-associated SNPs is associated with memory and absence of dementia. Convergent evidence from a set of bioinformatics analyses implicates four specific genes (KNCMA1, NRXN1, POU2F3, and SCRT). All of these genes are associated with a particular neurotransmitter pathway involved in synaptic plasticity, the main cellular mechanism for learning and memory.

Saturday, September 06, 2014

GameDay: Spartans vs Ducks

The Spartans hung in there (amazing that they were leading at the half) but ultimately the Ducks were too much.

I started out in the Spartan section but I went up to the Oregon President's box at halftime.





My t-shirt says "Spartan For Life" -- didn't go over very well with the Oregon fans! I took abuse everywhere except in the elitist box.







This is very Eugene: a human traffic jam crossing the footbridge over the Willamette river.




Friday, September 05, 2014

Back in Eugene

New UO science building:





Setting up for ESPN College GameDay:



Across the river to the stadium:




Ducks and Spartans play tomorrow:


I'm wrestling with divided loyalties. I've been a big Marcus Mariota fan since he came to UO, and I'd like to see him win a Heisman and a national title.


Craft brewing mecca:



@ Amazon

I was at the Amazon campus in Seattle yesterday to give a talk. Unbelievable construction and development in this part of town.








This is the famous Bezos "door desk" :-)

Sunday, August 31, 2014

Metabolic costs of human brain development


This paper quantifies the unusually high energetic cost of brain development in humans. Brain energy requirements and body-weight growth rate are anti-correlated in childhood. Given these results it would be surprising if nutritional limitations that prevented individuals from achieving their genetic potential in height didn't also lead to sub-optimal cognitive development. Nutritional deprivation likely stunts both mind and body.

See also Brainpower ain't free.
Metabolic costs and evolutionary implications of human brain development
(PNAS doi:10.1073/pnas.1323099111)

Significance
The metabolic costs of brain development are thought to explain the evolution of humans’ exceptionally slow and protracted childhood growth; however, the costs of the human brain during development are unknown. We used existing PET and MRI data to calculate brain glucose use from birth to adulthood. We find that the brain’s metabolic requirements peak in childhood, when it uses glucose at a rate equivalent to 66% of the body’s resting metabolism and 43% of the body’s daily energy requirement, and that brain glucose demand relates inversely to body growth from infancy to puberty. Our findings support the hypothesis that the unusually high costs of human brain development require a compensatory slowing of childhood body growth.

Abstract
The high energetic costs of human brain development have been hypothesized to explain distinctive human traits, including exceptionally slow and protracted preadult growth. Although widely assumed to constrain life-history evolution, the metabolic requirements of the growing human brain are unknown. We combined previously collected PET and MRI data to calculate the human brain’s glucose use from birth to adulthood, which we compare with body growth rate. We evaluate the strength of brain–body metabolic trade-offs using the ratios of brain glucose uptake to the body’s resting metabolic rate (RMR) and daily energy requirements (DER) expressed in glucose-gram equivalents (glucosermr% and glucoseder%). We find that glucosermr% and glucoseder% do not peak at birth (52.5% and 59.8% of RMR, or 35.4% and 38.7% of DER, for males and females, respectively), when relative brain size is largest, but rather in childhood (66.3% and 65.0% of RMR and 43.3% and 43.8% of DER). Body-weight growth (dw/dt) and both glucosermr% and glucoseder% are strongly, inversely related: soon after birth, increases in brain glucose demand are accompanied by proportionate decreases in dw/dt. Ages of peak brain glucose demand and lowest dw/dt co-occur and subsequent developmental declines in brain metabolism are matched by proportionate increases in dw/dt until puberty. The finding that human brain glucose demands peak during childhood, and evidence that brain metabolism and body growth rate covary inversely across development, support the hypothesis that the high costs of human brain development require compensatory slowing of body growth rate.

Thursday, August 28, 2014

Determination of Nonlinear Genetic Architecture using Compressed Sensing

It is a common belief in genomics that nonlinear interactions (epistasis) in complex traits make the task of reconstructing genetic models extremely difficult, if not impossible. In fact, it is often suggested that overcoming nonlinearity will require much larger data sets and significantly more computing power. Our results show that in broad classes of plausibly realistic models, this is not the case.
Determination of Nonlinear Genetic Architecture using Compressed Sensing (arXiv:1408.6583)
Chiu Man Ho, Stephen D.H. Hsu
Subjects: Genomics (q-bio.GN); Applications (stat.AP)

We introduce a statistical method that can reconstruct nonlinear genetic models (i.e., including epistasis, or gene-gene interactions) from phenotype-genotype (GWAS) data. The computational and data resource requirements are similar to those necessary for reconstruction of linear genetic models (or identification of gene-trait associations), assuming a condition of generalized sparsity, which limits the total number of gene-gene interactions. An example of a sparse nonlinear model is one in which a typical locus interacts with several or even many others, but only a small subset of all possible interactions exist. It seems plausible that most genetic architectures fall in this category. Our method uses a generalization of compressed sensing (L1-penalized regression) applied to nonlinear functions of the sensing matrix. We give theoretical arguments suggesting that the method is nearly optimal in performance, and demonstrate its effectiveness on broad classes of nonlinear genetic models using both real and simulated human genomes.
Click for larger image.

Cosmopolitans -- Whit Stillman returns on Amazon

The pilot isn't bad -- American expats in Paris :-) The cinematography is beautiful, but then it's hard to go wrong in Paris.

More Whit Stillman.

Rabbit genome: domestication via soft sweeps



Domestication -- genetic change in response to a drastic change in environment -- happened via allele frequency changes at many loci. I expect a similar pattern in humans due to, e.g., agriculture.

I don't know why some researchers find this result surprising -- it seemed quite likely to me that "adaptation to domestication" is a complex trait controlled by many loci. Hence a shift in the phenotype is likely to be accomplished through frequency changes at many alleles.
Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication (Science DOI: 10.1126/science.1253714)

The genetic changes underlying the initial steps of animal domestication are still poorly understood. We generated a high-quality reference genome for the rabbit and compared it to resequencing data from populations of wild and domestic rabbits. We identified more than 100 selective sweeps specific to domestic rabbits but only a relatively small number of fixed (or nearly fixed) single-nucleotide polymorphisms (SNPs) for derived alleles. SNPs with marked allele frequency differences between wild and domestic rabbits were enriched for conserved noncoding sites. Enrichment analyses suggest that genes affecting brain and neuronal development have often been targeted during domestication. We propose that because of a truly complex genetic background, tame behavior in rabbits and other domestic animals evolved by shifts in allele frequencies at many loci, rather than by critical changes at only a few domestication loci.
From the paper:
... directional selection events associated with rabbit domestication are consistent with polygenic and soft sweep modes of selection (18) that primarily acted on standing genetic variation in regulatory regions of the genome. This stands in contrast with breed-specific traits in many domesticated animals that often show a simple genetic basis with complete fixation of causative alleles (19). Our finding that many genes affecting brain and neuronal development have been targeted during rabbit domestication is fully consistent with the view that the most critical phenotypic changes during the initial steps of animal domestication probably involved behavioral traits that allowed animals to tolerate humans and the environment humans offered. On the basis of these observations, we propose that the reason for the paucity of specific fixed domestication genes in animals is that no single genetic change is either necessary or sufficient for domestication. Because of the complex genetic background for tame behavior, we propose that domestic animals evolved by means of many mutations of small effect, rather than by critical changes at only a few domestication loci.
I'll repeat again that simply changing a few hundred allele frequencies in humans could make us much much smarter ...

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